Overview

Plant species and plant tissue used in BacHBerryEXP:

• Rubus genevieri (Blackberry) - 3 fruit ripening stages (green, immature & ripe)
• Rubus idaeus cv. Prestige (Raspberry) - 3 fruit ripening stages (green, immature & ripe)

Fruit transcriptome sequence (13 plant species) and blast tools available at BacHBerryGEN

Citation

If you use the BacHBerryEXP Expression Browser in manuscripts and presentations, please cite:

Vera Thole, Jean-Etienne Bassard, Ricardo Ramírez-González, Martin Trick, Bijan Ghasemi Afshar, Dario Breitel, Lionel Hill, Alexandre Foito, Louise Shepherd, Sabine Freitag, Cláudia Nunes dos Santos, Regina Menezes, Pilar Bañados, Michael Naesby, Liangsheng Wang, Artem Sorokin, Olga Tikhonova, Tatiana Shelenga, Derek Stewart, Philippe Vain and Cathie Martin (2019) RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics. BMC Genomics 20: 995. 10.1186/s12864-019-6183-2

Philippa Borrill, Ricardo Ramirez-Gonzalez, and Cristobal Uauy expVIP: a customisable RNA-seq data analysis and visualisation platform Plant Physiology 2016 : pp.15.01667v1-pp.01667.2015. doi:10.1104/pp.15.01667

Contact

Please contact the following regarding questions or requests

• Dr Vera Thole - For information related to fruit gene expression
• Dr Ricardo Ramirez-Gonzalez - For enquiries regarding expVIP

Funding

• BacHBerryEXP is an output of the BacHBerry project (Bacterial Hosts for Production of Bioactive Phenolics from Berry Fruits). This work was supported by the European Union Framework Programme 7 [No. 613793].

Developers

expVIP was developed by Ricardo H. Ramirez-Gonzalez(github) and Bijan Ghasemi Afshar (github) within the Uauy lab.